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· Mars 16, 2023 6m de lecture

Kinds of properties in IRIS

InterSystems IRIS has quite a few different kinds properties. Let’s put them in order so that they make better sense.

First of all, I would divide them into categories:

  • Atomic or simple properties (all those %String, %Integer, %Data and other system or user datatypes)
  • References to stored objects
  • Built-in objects
  • Streams (both binary and character)
  • Collections (which are divided into arrays and lists)
  • Relationships (one-many and parent-children)

Some of these kinds of properties are quite straightforward. For example, atomic properties:

Property Name As %Name;
Property DoB As %Date
Property Age As %Integer

They are also easily created using Studio Wizard:

The concepts of references to stored objects and built-in objects are also quite easy to grasp. Basically, if the class of an object you’re trying to use as a property extends %Persistent, then it’s a reference to a stored object. If the related class extends %SerialObject – then it’s a built-in object, because such objects can’t be stored themselves, only inside other objects. And in a class definition they look exactly the same:

Property Human as Sample.Human;

To create this kind of property, on the second step of the Wizard in Studio enter the name of the class:

Streams are also quite easy to explain. You have a big chunk of unstructured data, be it binary or character, and here is your stream. Can be anything – audio, video, document, text etc. Depending on what type of data you want to store, you may choose to use Binary or Character Stream. Another defining characteristic of a stream is the place where you want to store it – on disk (takes less space but accessible from your OS unless you set up access rules for the folder) or in the database (secure, no unauthorized access, takes more space). To work with streams, use classes from package %Stream. For example:

Property Log As %Stream.GlobalCharacter;
Property Instruction As %Stream.FileCharacter(LOCATION = "D:\Temp");
Property Doc As %Stream.FileBinary;
Property Audio As %Stream.GlobalBinary;

In this case input the classname of the stream you wish to use:

Then there are two types of collections:

  • Lists – a collection where each element is defined by its position in the collection
Property FavoriteColors as list of %String;
  • Arrays – key-value pairs, where value is defined by its key that is set by a user
Property Contacts as array of %String;

Both collections can be of simple types or of objects. And when we’re talking about a collection of objects, the objects inside collection aren’t “aware” that they are inside any collection. Meaning that it’s a one-way link.

When working with arrays, it’s necessary to remember that both key and value should be new and useful piece of info. There is no point of making an integer key that will imitate a position in a list. In the example above, key of the Contacts array is a name of the type of the contact, e.g. “Facebook”, “LinkedIn”, “Twitter” etc and the value is a link to a personal page.

Under the hood, when working with a list, you’re working with the class %Collection.ListOfDT for a list of simple types, %Collection.ListOfObj when working with a list of objects and %Collection.ListOfStream when dealing with a list of streams.

The same is true for arrays. %Collection.ArrayOfDT is used when working with an array of simple datatypes, %Collection.ArrayOfObj – when working with an array of objects and %Collection.ArrayOfStream – when working with an array of streams.

For the collection on the second step of the Wizard in Studio choose the second option “The collection of type” 

and then specify the type:

And probably the most challenging kind of the property for people who switch from relational databases – relationship. The relationship is a two-way one-to-many link between two stored objects. In relational DBMS people are taught that they need an additional table to store the foreign keys to two other tables to realize one-to-many link of independent entities. For example:

table Invoice – table Product – table Invoice_Product

There is no need for an additional table/class to do this in IRIS. If there’s no need to often query the information about all the invoices in which the exact Product is listed you can make products as an array or list in an invoice. In this case you will have to manually ascertain logical integrity so that your invoice doesn’t reference products that are no longer in a DB.

To automatically check for the logical integrity of data in this case you can use a relationship between these two classes: Invoice, Product. There are two types of relationships:

  • Parent-children – it’s a dependent link between objects of two different persistent classes. It means that the dependent object can’t exist without the main object. For example, let’s say that a chapter in a book can’t exist without a book. This will be an example of parent-children relationship, where a book is a main object and chapter is a dependent object and if we delete a book all the chapters from this book will be deleted as well.
  • One-many – it’s an independent link between objects of one or two persistent classes. It means that both objects can exist and make sense one without the other and if you try to delete the aggregating object, you’ll get an error saying that you first have to unlink all the linked objects. If you try to delete the linked objects, they will disappear from the aggregating object. Let’s take our invoice and products as an example. We have many products in an invoice. If we try to delete an invoice, we first need to delete all the products from our invoice. If we delete a product, it will disappear from the invoice.

Since it’s a two-way link you need to define the properties in both classes. For example in a class Sample.Invoice you will have the definition:

Relationship Products As Sample.Product [ Cardinality = many, Inverse = Invoice ];


Note that the property is called Relationship and that it has two characteristics:

Cardinality = manymeaning that there are links to many objects inside this property

Inverse = Invoicethis is the name of the property on the other side of the relationship

At the same time in the other class (or it can be in the same class for one-many relationship) there should be the mirror property:

Relationship Invoice As Sample.Invoice [ Cardinality = one, Inverse = Products ];

Here cardinality “one” means that in this property there is a link only to one object.

To create a relationship using Wizard in Studio just choose on the second step Relationship:

Then choose the correct cardinality for the property in the class and fill in the name of the related class and property in it:

For the example with the book with chapters the properties would look as follows.

In a class Sample.Book:

Relationship Chapters As Sample.Chapter [ Cardinality = children, Inverse = Book ];

In a class Sample.Chapter:

Relationship Book As Sample.Book [ Cardinality = parent, Inverse = Chapters ];

This is the end of a brief overview of different kinds of properties present in IRIS. Hope it makes it clearer.

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Question
· Mars 15, 2023

How to convert a FHIR Patient resource in XML format into a Cache object

Hi.

We are going to have basic patient demographic data coming in to Cache via a webservice. I thought that I should define the input as XML something like the FHIR format (with UK extensions).

In the past we've input XML streams and used the  %XML.Reader to convert them to matching classes successfully, so I thought it would be easy. However, I've found that the FHIR format stores everything in attributes like:

  <gender value="male"/>
  <birthDate value="1982-01-23"/>

Looking in the Cache documentation here there seems no easy way to make a property match to an attribute of "value" without defining another class for each item with a single property called "value" and  XMLPROJECTION = "ATTRIBUTE" . Is that correct or have I missed something? I could invest in Ensemble or IRIS (though I can see nothing different in the IRIS documentation), but seems overkill for one small inbound message. Or should I forget FHIR and stick to a simple XML structure.

Thanks / Mike

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Question
· Mars 14, 2023

Creating Http Responses

Hello,

I want to generate and return an http response based on the input of a http GET request. For my first steps I used an EnsLib.Http.GenericService, which uses an EnsLib.HTTP.InboundAdapter to receive requests like http://[my server]:[my-port]/some-path?ID=12345678.

On the inbound side I receive a EnsLib.HTTP.GenericMessage Object which contains the parameters and some other useful information that I can work with. What I would like to do now is to create a simple HTML page, which contains some Information specific for the given parameter values. All my different attempts to return something, which can be parsed by a browser (or at least shown as a http response in postman) failed up to now.

I think this task is normally done by a webapp, but using an interoperability production makes other things a lot easier for me.

Could anyone provide a snippet how to create a valid Response object inside the OnRequest method of an Ens.BusinessProcess to make me understand the priciple? The target is to receive the request from any web browser and return a page, which then is shown inside of the browser as the result of the request.

Thanks and regards,

Martin

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Article
· Mars 12, 2023 1m de lecture

Create FHIR REST Client

Add a credential to login the FHIR REST interface - in this case only consider a basic authentication

 

 

Add Service Registry  - in this case only consider a basic authentication

- setup a HTTP service

- input the Path to the FHIR Server

- input the URL to the FHIR service

- use the credential profiled
 

 

Add a "HS.FHIRServer.Interop.HTTPOperation"

Choose the Service Name

 

Test the FHIR Client

 

Trace the test result

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Article
· Mars 8, 2023 5m de lecture

Keep your docker iris images in shape ;)

iris-docker-multi-stage-script

A python script to keep your docker iris images in shape ;)

Witout changing your dockerfile or your code you can reduce the size of your image by 50% or more !

TL;DR

Name the builder image builder and the final image final and add this to end of your Dockerfile:

Modify your Dockerfile to use a multi-stage build:

ARG IMAGE=intersystemsdc/irishealth-community:latest
FROM $IMAGE as builder

Add this to end of your Dockerfile:

FROM $IMAGE as final

ADD --chown=${ISC_PACKAGE_MGRUSER}:${ISC_PACKAGE_IRISGROUP} https://github.com/grongierisc/iris-docker-multi-stage-script/releases/latest/download/copy-data.py /irisdev/app/copy-data.py

RUN --mount=type=bind,source=/,target=/builder/root,from=builder \
    cp -f /builder/root/usr/irissys/iris.cpf /usr/irissys/iris.cpf && \
    python3 /irisdev/app/copy-data.py -c /usr/irissys/iris.cpf -d /builder/root/ 

Boom! You're done!

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